It appears though that I must generate a CPT code each time I do this. Is there a way to automate this a little more?
You could make a template for each procedure, and fill in the particulars, i.e.:
PROCEDURE: punch biopsy of the skin (11100)
SITE: [left/right] [upper/lower] [extremity/face]
PREOP DIAGNOSIS: Unspecified disorder of skin and subcutaneous tissue (709.8)
POSTOP DIAGNOSIS: Malignant neoplasm of connective and other soft tissue site unspecified (171.8)
Using Betadine prep and sterile technique...
Obviously, I am probably way off base with the codes, but just an example of my suggestion...