Jon,
Yes, to be more precise, the core and menu items were counting without a CPT code on the encounter. The CQMs require the CPT code to be present in order to populate the numerator and denominator.
Ted,
Just add your CPT code to the visit superbill, your previously recorded ICD-9 will be there, and you will get credit in the MU wizard for your CQM. All my CPT codes have a $0 charge (since I am not really using them in AC). Just adding the CPT does the trick.
These are the results of my experimentation with it today.
